Detailed information of SNP:
|
SNP ID:
sf0719080493(Gbrowse)
Chromosome: chr07 Position: 19080493 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.31% | 43.69% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719080493 | G->A | INTERGENIC | None |