Detailed information of SNP:
|
SNP ID:
sf0719087281(Gbrowse)
Chromosome: chr07 Position: 19087281 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.62% | 45.38% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 495 | 13.94% | 86.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719087281 | C->T | INTERGENIC | None |