Detailed information of SNP:
|
SNP ID:
sf0719087540(Gbrowse)
Chromosome: chr07 Position: 19087540 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 53.75% | 46.25% |
| All Indica | 795 | 83.65% | 16.35% |
| All Japonica | 495 | 14.14% | 85.86% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719087540 | C->T | INTERGENIC | None |