Detailed information of SNP:
|
SNP ID:
sf0719087900(Gbrowse)
Chromosome: chr07 Position: 19087900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.32% | 8.68% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719087900 | C->T | INTERGENIC | None |