Detailed information of SNP:
|
SNP ID:
sf0719089543(Gbrowse)
Chromosome: chr07 Position: 19089543 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.72% | 45.28% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 496 | 14.31% | 85.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719089543 | G->A | INTERGENIC | None |