Detailed information of SNP:
|
SNP ID:
sf0719089554(Gbrowse)
Chromosome: chr07 Position: 19089554 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.07% | 28.93% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 495 | 21.01% | 78.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719089554 | C->T | INTERGENIC | None |