Detailed information of SNP:
|
SNP ID:
sf0719090468(Gbrowse)
Chromosome: chr07 Position: 19090468 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.81% | 7.19% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719090468 | T->A | LOC_Os07g32140(LOC_Os07g32140.1) | Non-Synonymous SNP |