Detailed information of SNP:



SNP ID: sf0719090468(Gbrowse)

Chromosome: chr07

Position: 19090468
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1418 92.81% 7.19%
All Indica798 93.48% 6.52%
All Japonica497 94.16% 5.84%
Aus67 76.12% 23.88%
Indica I375 95.47% 4.53%
Indica II213 94.37% 5.63%
Indica Intermediate210 89.05% 10.95%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 71.28% 28.72%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0719090468 T->A LOC_Os07g32140(LOC_Os07g32140.1) Non-Synonymous SNP