Detailed information of SNP:
|
SNP ID:
sf0719099270(Gbrowse)
Chromosome: chr07 Position: 19099270 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719099270 | C->T | LOC_Os07g32170(LOC_Os07g32170.2) | UTR_3_PRIME |
| sf0719099270 | C->T | LOC_Os07g32170(LOC_Os07g32170.1) | UTR_3_PRIME |