Detailed information of SNP:
|
SNP ID:
sf0719105966(Gbrowse)
Chromosome: chr07 Position: 19105966 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 496 | 14.52% | 85.48% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719105966 | G->A | INTERGENIC | None |