Detailed information of SNP:
|
SNP ID:
sf0719118973(Gbrowse)
Chromosome: chr07 Position: 19118973 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 54.71% | 45.29% |
| All Indica | 772 | 20.98% | 79.02% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 356 | 12.92% | 87.08% |
| Indica II | 210 | 12.86% | 87.14% |
| Indica Intermediate | 206 | 43.20% | 56.80% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719118973 | G->A | INTERGENIC | None |