Detailed information of SNP:
|
SNP ID:
sf0719119993(Gbrowse)
Chromosome: chr07 Position: 19119993 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 64.33% | 35.67% |
| All Indica | 777 | 37.71% | 62.29% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 12.67% | 87.33% |
| Indica II | 209 | 61.24% | 38.76% |
| Indica Intermediate | 205 | 58.05% | 41.95% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719119993 | C->G | INTERGENIC | None |