Detailed information of SNP:
|
SNP ID:
sf0719122530(Gbrowse)
Chromosome: chr07 Position: 19122530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.07% | 16.93% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719122530 | C->T | INTERGENIC | None |