Detailed information of SNP:
|
SNP ID:
sf0719123642(Gbrowse)
Chromosome: chr07 Position: 19123642 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.44% | 34.56% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719123642 | A->T | INTERGENIC | None |