Detailed information of SNP:
|
SNP ID:
sf0719126237(Gbrowse)
Chromosome: chr07 Position: 19126237 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.07% | 32.93% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 497 | 20.32% | 79.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719126237 | C->T | INTERGENIC | None |