Detailed information of SNP:
|
SNP ID:
sf0719126706(Gbrowse)
Chromosome: chr07 Position: 19126706 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.94% | 34.06% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719126706 | A->T | INTERGENIC | None |