Detailed information of SNP:
|
SNP ID:
sf0719130369(Gbrowse)
Chromosome: chr07 Position: 19130369 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 496 | 13.71% | 86.29% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719130369 | T->C | INTERGENIC | None |