Detailed information of SNP:
|
SNP ID:
sf0719130802(Gbrowse)
Chromosome: chr07 Position: 19130802 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1292 | 60.53% | 39.47% |
| All Indica | 677 | 26.59% | 73.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 309 | 19.09% | 80.91% |
| Indica II | 186 | 16.67% | 83.33% |
| Indica Intermediate | 182 | 49.45% | 50.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719130802 | T->C | INTERGENIC | None |