Detailed information of SNP:
|
SNP ID:
sf0719130931(Gbrowse)
Chromosome: chr07 Position: 19130931 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 62.72% | 37.28% |
| All Indica | 795 | 93.96% | 6.04% |
| All Japonica | 496 | 13.10% | 86.90% |
| Aus | 35 | 62.86% | 37.14% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 8 | 25.00% | 75.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719130931 | G->C | INTERGENIC | None |