Detailed information of SNP:
|
SNP ID:
sf0719131492(Gbrowse)
Chromosome: chr07 Position: 19131492 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.90% | 15.10% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719131492 | C->T | INTERGENIC | None |