Detailed information of SNP:
|
SNP ID:
sf0719132369(Gbrowse)
Chromosome: chr07 Position: 19132369 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 52.41% | 47.59% |
| All Indica | 753 | 90.97% | 9.03% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 351 | 97.72% | 2.28% |
| Indica II | 203 | 88.18% | 11.82% |
| Indica Intermediate | 199 | 81.91% | 18.09% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719132369 | C->T | INTERGENIC | None |