Detailed information of SNP:
|
SNP ID:
sf0719134314(Gbrowse)
Chromosome: chr07 Position: 19134314 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 64.44% | 35.56% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 35 | 62.86% | 37.14% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 8 | 37.50% | 62.50% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719134314 | T->C | INTERGENIC | None |