Detailed information of SNP:
|
SNP ID:
sf0719134318(Gbrowse)
Chromosome: chr07 Position: 19134318 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719134318 | T->C | INTERGENIC | None |