Detailed information of SNP:
|
SNP ID:
sf0719135256(Gbrowse)
Chromosome: chr07 Position: 19135256 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.37% | 44.63% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719135256 | C->T | LOC_Os07g32190(LOC_Os07g32190.1) | Synonymous |