Detailed information of SNP:
|
SNP ID:
sf0719135343(Gbrowse)
Chromosome: chr07 Position: 19135343 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.51% | 47.49% |
| All Indica | 795 | 88.93% | 11.07% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719135343 | G->A | LOC_Os07g32190(LOC_Os07g32190.1) | Synonymous |