Detailed information of SNP:
|
SNP ID:
sf0719135423(Gbrowse)
Chromosome: chr07 Position: 19135423 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.28% | 45.72% |
| All Indica | 795 | 91.95% | 8.05% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719135423 | C->T | LOC_Os07g32190(LOC_Os07g32190.1) | Non-Synonymous SNP |