Detailed information of SNP:
|
SNP ID:
sf0719137055(Gbrowse)
Chromosome: chr07 Position: 19137055 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719137055 | A->G | LOC_Os07g32200(LOC_Os07g32200.1) | INTRON |