Detailed information of SNP:
|
SNP ID:
sf0719138087(Gbrowse)
Chromosome: chr07 Position: 19138087 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.32% | 46.68% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719138087 | C->T | INTERGENIC | None |