Detailed information of SNP:
|
SNP ID:
sf0719139033(Gbrowse)
Chromosome: chr07 Position: 19139033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 58.12% | 41.88% |
| All Indica | 766 | 26.37% | 73.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 17.93% | 82.07% |
| Indica II | 206 | 17.48% | 82.52% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139033 | C->T | INTERGENIC | None |