Detailed information of SNP:
|
SNP ID:
sf0719139322(Gbrowse)
Chromosome: chr07 Position: 19139322 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 50.81% | 49.19% |
| All Indica | 748 | 15.37% | 84.63% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 348 | 11.49% | 88.51% |
| Indica II | 201 | 15.92% | 84.08% |
| Indica Intermediate | 199 | 21.61% | 78.39% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139322 | A->C | INTERGENIC | None |