Detailed information of SNP:
|
SNP ID:
sf0719139454(Gbrowse)
Chromosome: chr07 Position: 19139454 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.07% | 38.93% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139454 | C->T | LOC_Os07g32220(LOC_Os07g32220.1) | Non-Synonymous SNP |