Detailed information of SNP:
|
SNP ID:
sf0719139505(Gbrowse)
Chromosome: chr07 Position: 19139505 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.52% | 7.48% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139505 | G->A | LOC_Os07g32220(LOC_Os07g32220.1) | Non-Synonymous SNP |