Detailed information of SNP:
|
SNP ID:
sf0719139786(Gbrowse)
Chromosome: chr07 Position: 19139786 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 85.29% | 14.71% |
| All Indica | 781 | 92.96% | 7.04% |
| All Japonica | 470 | 72.98% | 27.02% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 365 | 93.70% | 6.30% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 318 | 73.58% | 26.42% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 61 | 54.10% | 45.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139786 | A->G | LOC_Os07g32220(LOC_Os07g32220.1) | Synonymous |