Detailed information of SNP:
|
SNP ID:
sf0719139882(Gbrowse)
Chromosome: chr07 Position: 19139882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 54.37% | 45.63% |
| All Indica | 764 | 20.94% | 79.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 359 | 17.55% | 82.45% |
| Indica II | 202 | 21.29% | 78.71% |
| Indica Intermediate | 203 | 26.60% | 73.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139882 | C->T | LOC_Os07g32220(LOC_Os07g32220.1) | Synonymous |