Detailed information of SNP:
|
SNP ID:
sf0719139925(Gbrowse)
Chromosome: chr07 Position: 19139925 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 61.92% | 38.08% |
| All Indica | 698 | 87.39% | 12.61% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 304 | 92.43% | 7.57% |
| Indica II | 202 | 86.14% | 13.86% |
| Indica Intermediate | 192 | 80.73% | 19.27% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719139925 | T->C | LOC_Os07g32220(LOC_Os07g32220.1) | Non-Synonymous SNP |