Detailed information of SNP:
|
SNP ID:
sf0719140608(Gbrowse)
Chromosome: chr07 Position: 19140608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 92.79% | 7.21% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 494 | 94.53% | 5.47% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719140608 | G->A | LOC_Os07g32220(LOC_Os07g32220.1) | Synonymous |