Detailed information of SNP:
|
SNP ID:
sf0719140845(Gbrowse)
Chromosome: chr07 Position: 19140845 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.22% | 6.78% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719140845 | G->A | LOC_Os07g32220(LOC_Os07g32220.1) | Synonymous |