Detailed information of SNP:
|
SNP ID:
sf0719143066(Gbrowse)
Chromosome: chr07 Position: 19143066 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 94.94% | 5.06% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 54 | 48.15% | 51.85% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719143066 | A->T | INTERGENIC | None |