Detailed information of SNP:
|
SNP ID:
sf0719143842(Gbrowse)
Chromosome: chr07 Position: 19143842 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 93.34% | 6.66% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 94.55% | 5.45% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719143842 | T->C | INTERGENIC | None |