Detailed information of SNP:
|
SNP ID:
sf0719144634(Gbrowse)
Chromosome: chr07 Position: 19144634 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 93.05% | 6.95% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 93.88% | 6.12% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719144634 | A->C | INTERGENIC | None |