Detailed information of SNP:
|
SNP ID:
sf0719145282(Gbrowse)
Chromosome: chr07 Position: 19145282 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 798 | 94.11% | 5.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719145282 | T->C | INTERGENIC | None |