Detailed information of SNP:
|
SNP ID:
sf0719152240(Gbrowse)
Chromosome: chr07 Position: 19152240 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 57.63% | 42.37% |
| All Indica | 771 | 25.81% | 74.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 18.82% | 81.18% |
| Indica II | 209 | 14.83% | 85.17% |
| Indica Intermediate | 206 | 49.03% | 50.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719152240 | G->A | INTERGENIC | None |