Detailed information of SNP:
|
SNP ID:
sf0719158487(Gbrowse)
Chromosome: chr07 Position: 19158487 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 93.84% | 6.16% |
| All Indica | 781 | 90.91% | 9.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 199 | 81.91% | 18.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719158487 | T->C | INTERGENIC | None |