Detailed information of SNP:
|
SNP ID:
sf0719180449(Gbrowse)
Chromosome: chr07 Position: 19180449 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 85.92% | 14.08% |
| All Indica | 794 | 89.42% | 10.58% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 72.46% | 27.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719180449 | A->T | INTERGENIC | None |