Detailed information of SNP:
|
SNP ID:
sf0719181561(Gbrowse)
Chromosome: chr07 Position: 19181561 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.81% | 45.19% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719181561 | T->C | INTERGENIC | None |