Detailed information of SNP:
|
SNP ID:
sf0719185801(Gbrowse)
Chromosome: chr07 Position: 19185801 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 68.62% | 31.38% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 494 | 20.65% | 79.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 91 | 74.73% | 25.27% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719185801 | T->C | INTERGENIC | None |