Detailed information of SNP:
|
SNP ID:
sf0719187034(Gbrowse)
Chromosome: chr07 Position: 19187034 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719187034 | C->A | INTERGENIC | None |