Detailed information of SNP:
|
SNP ID:
sf0719187671(Gbrowse)
Chromosome: chr07 Position: 19187671 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.34% | 45.66% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 496 | 14.52% | 85.48% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719187671 | A->G | INTERGENIC | None |