Detailed information of SNP:
|
SNP ID:
sf0719190469(Gbrowse)
Chromosome: chr07 Position: 19190469 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.46% | 8.54% |
| All Indica | 797 | 90.46% | 9.54% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719190469 | C->T | INTERGENIC | None |