Detailed information of SNP:
|
SNP ID:
sf0719190891(Gbrowse)
Chromosome: chr07 Position: 19190891 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 53.76% | 46.24% |
| All Indica | 767 | 18.51% | 81.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 10.08% | 89.92% |
| Indica II | 207 | 10.14% | 89.86% |
| Indica Intermediate | 203 | 41.87% | 58.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719190891 | T->C | INTERGENIC | None |