Detailed information of SNP:
|
SNP ID:
sf0719199616(Gbrowse)
Chromosome: chr07 Position: 19199616 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.50% | 43.50% |
| All Indica | 797 | 92.72% | 7.28% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719199616 | A->T | INTERGENIC | None |